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Contig Viewer: Contig14197 from Project 'Salmo salar - All 100/99 -> 300/96'
Position Clone Name Sequence
   
|--------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|-----|
1 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620
[TRANSLATE <->]

1->626 (626 bps)
DNA CONTIG (626 bps, 3 reads)

CLUSTER_ID#3970798 (3 reads)

ggggTCTTGGCATTGATTTTGCAACACGCAAGATTGCAAACATGTTGAAGCCGCAGAAAGTGATTGAACAAGACAGTGATTCTTTCACCATCAAGACACTCACTACCTTCAAAAACTACACAGTCTCATTCAAGATTGGGGAAGAGTTTGAGGAGGTGGCCAAAGCCATGGATAACAGAAAAGTCCAGACGGTGGTCAACTGGGACCATGATAAACTAGTGTGTGTTCAGAAGGGAGAGAAGAAGAACAGAGGGTGGACGCACTGGATAGAAGGAAATGAGCTCTATCTGGAACTCACCTGTGAGGATAAAGTCTGCAAGCAAATTTATAAAAAGAGTGCTTGACCATGCTTTAACCATAATATTTCTGCAACCTTATATTTTTTTTAAATATGCTTCAATCATAAATGTATCACTAAAATGATATGCTCATGGTACGCATGCTTTGAGTACCCAAAGAATTTGAAGAAAACATTAACATCATTAACAGAAATAGCAATGGTAATCATATGCTTGATGTGCATTGAGGAGTTGTATGTCCATTGTTATTTTTGAGTGGCTTGATAGTTCATGATTATCTACAATAAATGTGATTTACCTACTACCATCAATAAAGCACTGGACCAT

ggggTCTTGGCATTGATTTTGCAACACGCAAGATTGCAAACATGTTGAAGCCGCAGAAAGTGATTGAACAAGACAGTGATTCTTTCACCATCAAGACACTCACTACCTTCAAAAACTACACAGTCTCATTCAAGATTGGGGAAGAGTTTGAGGAGGTGGCCAAAGCCATGGATAACAGAAAAGTCCAGACGGTGGTCAACTGGGACCATGATAAACTAGTGTGTGTTCAGAAGGGAGAGAAGAAGAACAGAGGGTGGACGCACTGGATAGAAGGAAATGAGCTCTATCTGGAACTCACCTGTGAGGATAAAGTCTGCAAGCAAATTTATAAAAAGAGTGCTTGACCATGCTTTAACCATAATATTTCTGCAACCTTATATTTTTTTTAAATATGCTTCAATCATAAATGTATCACTAAAATGATATGCTCATGGTACGCATGCTTTGAGTACCCAAAGAATTTGAAGAAAACATTAACATCATTAACAGAAATAGCAATGGTAATCATATGCTTGATGTGCATTGAGGAGTTGTATGTCCATTGTTATTTTTGAGTGGCTTGATAGTTCATGATTATCTACAATAAATGTGATTTACCTACTACCATCAATAAAGCACTGGACCAT



Annotation Viewer: Contig14197 from Project 'Salmo salar - All 100/99 -> 300/96'
*[TargetIdentifier classifies this cDNA sequence as being short (36) full-length]
 


Annotation Summary: Contig14197 from Project 'Salmo salar - All 100/99 -> 300/96'
  E-Value Bit Score Identities Positives Gaps Frame From To Database Accession Description
1 2e-42 442 (76/111) 68% (96/111) 86% (0/0) 0% +3 6 338 refseq ref|XP_001365670.1| ref|XP_001365670.1| PREDICTED: similar to retinoid binding protein 7 [Monodelphis...
2 6e-41 418 (72/111) 64% (95/111) 85% (0/0) 0% +3 6 338 go MGI|MGI:1890409 MGI|MGI:1890409 - symbol:Rbp7 "retinol binding protein 7 cellular"...
3 1e-40 418 (72/111) 64% (95/111) 85% (0/0) 0% +3 6 338 swissprot sp|Q9EPC5|RET7_MOUSE Q9EPC5 sp|Q9EPC5|RET7_MOUSE Retinoid-binding protein 7 (Cellular retinoic acid-binding protein...
4 6e-40 412 (71/111) 63% (95/111) 85% (0/0) 0% +3 6 338 swissprot sp|Q96R05|RET7_HUMAN Q96R05 sp|Q96R05|RET7_HUMAN Retinoid-binding protein 7 (Cellular retinoic acid-binding protein...
5 1e-39 418 (72/111) 64% (95/111) 85% (0/0) 0% +3 6 338 refseq ref|NP_071303.1| ref|NP_071303.1| retinol binding protein 7 cellular [Mus musculus]...
6 2e-39 417 (70/111) 63% (96/111) 86% (0/0) 0% +3 6 338 refseq ref|XP_536740.1| ref|XP_536740.1| PREDICTED: similar to retinol binding protein 7 cellular [Canis...
7 7e-39 412 (71/111) 63% (95/111) 85% (0/0) 0% +3 6 338 refseq ref|NP_443192.1| ref|NP_443192.1| retinol binding protein 7 cellular [Homo sapiens]...
8 3e-38 406 (70/111) 63% (92/111) 82% (0/0) 0% +3 6 338 refseq ref|NP_001102163.1| ref|NP_001102163.1| retinol binding protein 7 cellular [Rattus norvegicus]...
9 4e-38 405 (74/110) 67% (88/110) 80% (0/0) 0% +3 6 335 refseq ref|XP_422636.1| ref|XP_422636.1| PREDICTED: similar to Retinol-binding protein II cellular...
10 1e-37 401 (74/110) 67% (88/110) 80% (0/0) 0% +3 6 335 refseq ref|XP_001505436.1| ref|XP_001505436.1| PREDICTED: similar to 5-methyltetrahydrofolate-homocysteine...
11 2e-36 390 (69/111) 62% (90/111) 81% (0/0) 0% +3 6 338 refseq ref|XP_001490752.1| ref|XP_001490752.1| PREDICTED: similar to retinoid binding protein 7 [Equus caballus]...
12 2e-36 379 (68/110) 61% (86/110) 78% (0/0) 0% +3 6 335 go UNIPROTKB|P50120 UNIPROTKB|P50120 - symbol:RET2_HUMAN "CRBP2 RBP2: Retinol-binding...
13 4e-36 388 (72/110) 65% (84/110) 76% (0/0) 0% +3 6 335 refseq ref|NP_001002307.1| ref|NP_001002307.1| retinol binding protein 2b cellular [Danio rerio]...
14 4e-36 388 (72/110) 65% (87/110) 79% (0/0) 0% +3 6 335 refseq ref|NP_694549.1| ref|NP_694549.1| retinol binding protein 2a cellular [Danio rerio]...
15 4e-36 379 (68/110) 61% (86/110) 78% (0/0) 0% +3 6 335 swissprot sp|P50120|RET2_HUMAN P50120 sp|P50120|RET2_HUMAN Retinol-binding protein II cellular (CRBP-II)...
16 1e-35 376 (66/110) 60% (85/110) 77% (0/0) 0% +3 6 335 swissprot sp|P50121|RET2_PIG P50121 sp|P50121|RET2_PIG Retinol-binding protein II cellular (CRBP-II)...
17 2e-34 361 (64/110) 58% (84/110) 76% (0/0) 0% +3 6 335 go MGI|MGI:97877 MGI|MGI:97877 - symbol:Rbp2 "retinol binding protein 2 cellular"...
18 5e-34 361 (64/110) 58% (84/110) 76% (0/0) 0% +3 6 335 swissprot sp|Q08652|RET2_MOUSE Q08652 sp|Q08652|RET2_MOUSE Retinol-binding protein II cellular (CRBP-II)...
19 5e-34 361 (64/110) 58% (84/110) 76% (0/0) 0% +3 6 335 swissprot sp|P06768|RET2_RAT P06768 sp|P06768|RET2_RAT Retinol-binding protein II cellular (CRBP-II)...
20 9e-34 356 (63/110) 57% (83/110) 75% (0/0) 0% +3 6 335 go MGI|MGI:97876 MGI|MGI:97876 - symbol:Rbp1 "retinol binding protein 1 cellular"...
21 2e-33 356 (64/110) 58% (83/110) 75% (0/0) 0% +3 6 335 swissprot sp|P09455|RET1_HUMAN P09455 sp|P09455|RET1_HUMAN Retinol-binding protein I cellular (Cellular retinol-binding...
22 2e-33 356 (63/110) 57% (83/110) 75% (0/0) 0% +3 6 335 swissprot sp|Q00915|RET1_MOUSE Q00915 sp|Q00915|RET1_MOUSE Retinol-binding protein I cellular (Cellular retinol-binding...
23 2e-33 353 (62/110) 56% (80/110) 72% (0/0) 0% +3 6 335 go UNIPROTKB|P82980 UNIPROTKB|P82980 - symbol:RET5_HUMAN "RBP5: Retinol-binding protein...
24 3e-33 352 (63/110) 57% (83/110) 75% (0/0) 0% +3 6 335 go UNIPROTKB|P02694 UNIPROTKB|P02694 - symbol:RET1_BOVIN "RBP1: Retinol-binding protein...
25 4e-33 353 (63/110) 57% (82/110) 74% (0/0) 0% +3 6 335 swissprot sp|P02696|RET1_RAT P02696 sp|P02696|RET1_RAT Retinol-binding protein I cellular (Cellular retinol-binding...
26 4e-33 353 (62/110) 56% (80/110) 72% (0/0) 0% +3 6 335 swissprot sp|P82980|RET5_HUMAN P82980 sp|P82980|RET5_HUMAN Retinol-binding protein III cellular (CRBP-III) (HRBPiso)...
27 7e-31 331 (63/111) 56% (79/111) 71% (0/0) 0% +3 6 338 go ZFIN|ZDB-GENE-050421-2 ZFIN|ZDB-GENE-050421-2 - symbol:rbp1b "retinol binding protein 1b...
28 7e-18 219 (45/111) 40% (71/111) 63% (0/0) 0% +3 6 338 go UNIPROTKB|O15540 UNIPROTKB|O15540 - symbol:FABP7_HUMAN "FABP7 BLBP FABPB MRG:...
29 3e-17 214 (47/112) 41% (70/112) 62% (0/0) 0% +3 6 341 go UNIPROTKB|P05413 UNIPROTKB|P05413 - symbol:FABPH_HUMAN "FABP3 FABP11 MDGI: Fatty...
30 7e-17 210 (47/112) 41% (71/112) 63% (0/0) 0% +3 6 341 go MGI|MGI:95476 MGI|MGI:95476 - symbol:Fabp3 "fatty acid binding protein 3 muscle...



Author: Jong Leong
Centre for Biomedical Research 2006-2010